JASPAR Collection UNVALIDATED

  1. Home
  2. Collection UNVALIDATED

Total 999 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0390.2 AT2G31460 Arabidopsis thaliana B3 REM
UN0391.1 AT3G58630 Arabidopsis thaliana Tryptophan cluster factors Trihelix
UN0391.2 AT3G58630 Arabidopsis thaliana Tryptophan cluster factors Trihelix
UN0392.1 AT4G00390 Arabidopsis thaliana GeBP/Storekeeper
UN0392.2 AT4G00390 Arabidopsis thaliana Tryptophan cluster factors Storekeeper
UN0394.1 AtPLATZ6 Arabidopsis thaliana CHC2-C2H2-C4 zinc finger factors Platz
UN0394.2 AtPLATZ6 Arabidopsis thaliana PLATZ
UN0396.1 CRC Arabidopsis thaliana High-mobility group (HMG) domain factors YABBY
UN0397.1 EDF3 Arabidopsis thaliana B3 RAV
UN0398.1 ENY Arabidopsis thaliana C2H2 zinc finger factors
Showing 10 profiles of page 35 from 100 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.