JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0235.1 onecut Drosophila melanogaster Homeo domain factors HD-CUT
MA0236.1 otp Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0237.1 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0237.2 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0238.1 pb Drosophila melanogaster Homeo domain factors HOX
MA0239.1 prd Drosophila melanogaster Paired box factors
MA0239.2 prd Drosophila melanogaster Paired box factors
MA0240.1 repo Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0241.1 ro Drosophila melanogaster Homeo domain factors HOX
MA0242.1 Bgb::run Drosophila melanogaster Runt domain factors Runt-related factors
MA0243.1 sd Drosophila melanogaster TEA domain factors TEF-1-related factors
MA0243.2 sd Drosophila melanogaster TEA domain factors TEF-1-related factors
MA0244.1 slbo Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA0245.1 slou Drosophila melanogaster Homeo domain factors NK
MA0246.1 so Drosophila melanogaster Homeo domain factors HD-SINE
MA0247.1 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.2 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.3 tin Drosophila melanogaster Homeo domain factors Homeo
MA0248.1 tup Drosophila melanogaster Homeo domain factors HD-LIM
MA0249.1 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0249.2 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0249.3 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0250.1 unc-4 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0251.1 unpg Drosophila melanogaster Homeo domain factors HOX
MA0252.1 vis Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0252.2 vis Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0253.1 vnd Drosophila melanogaster Homeo domain factors NK
MA0254.1 vvl Drosophila melanogaster Homeo domain factors POU domain factors
MA0255.1 z Drosophila melanogaster
MA0255.2 z Drosophila melanogaster
MA0256.1 zen Drosophila melanogaster Homeo domain factors HOX
MA0257.1 zen2 Drosophila melanogaster Homeo domain factors HOX
MA0257.2 zen2 Drosophila melanogaster Homeo domain factors HOX
MA0258.1 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0258.2 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0259.1 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0259.2 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0260.1 che-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0261.1 lin-14 Caenorhabditis elegans
MA0262.1 mab-3 Caenorhabditis elegans DM-type intertwined zinc finger factors DMRT factors
MA0263.1 ceh-10::ttx-3 Caenorhabditis elegans Homeo domain factors Paired-related HD factors::HD-LIM factors
MA0264.1 ceh-22 Caenorhabditis elegans Homeo domain factors NK
MA0264.2 ceh-22 Caenorhabditis elegans Homeo domain factors NK
MA0265.1 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0265.2 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0265.3 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0266.1 ABF2 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0266.2 ABF2 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0267.1 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0267.2 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 50 profiles of page 11 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.