JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0267.1 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0267.2 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0268.1 ADR1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0268.2 ADR1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0269.1 AFT1 Saccharomyces cerevisiae
MA0269.2 AFT1 Saccharomyces cerevisiae
MA0270.1 AFT2 Saccharomyces cerevisiae
MA0270.2 AFT2 Saccharomyces cerevisiae
MA0271.1 ARG80 Saccharomyces cerevisiae MADS box factors
MA0272.1 ARG81 Saccharomyces cerevisiae C6 zinc cluster factors
MA0272.2 ARG81 Saccharomyces cerevisiae C6 zinc cluster factors
MA0273.1 ARO80 Saccharomyces cerevisiae C6 zinc cluster factors
MA0273.2 ARO80 Saccharomyces cerevisiae C6 zinc cluster factors
MA0274.1 ARR1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0275.1 ASG1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0276.1 ASH1 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0277.1 AZF1 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0278.1 BAS1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0278.2 BAS1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0279.1 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0279.2 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0279.3 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0280.1 CAT8 Saccharomyces cerevisiae C6 zinc cluster factors
MA0280.2 CAT8 Saccharomyces cerevisiae C6 zinc cluster factors
MA0281.1 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
Showing 25 profiles of page 23 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.