JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0165.1 Abd-B Drosophila melanogaster Homeo domain factors HOX
MA0166.1 Antp Drosophila melanogaster Homeo domain factors HOX
MA0167.1 Awh Drosophila melanogaster Homeo domain factors HD-LIM
MA0168.1 B-H1 Drosophila melanogaster Homeo domain factors HOX
MA0169.1 B-H2 Drosophila melanogaster Homeo domain factors HOX
MA0170.1 C15 Drosophila melanogaster Homeo domain factors NK
MA0171.1 CG11085 Drosophila melanogaster Homeo domain factors NK
MA0172.1 CG11294 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0173.1 CG11617 Drosophila melanogaster Homeo domain factors TALE-type HD
MA0174.1 Dbx Drosophila melanogaster Homeo domain factors Homeo
Showing 10 profiles of page 43 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.