JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0873.1 HOXD12 Homo sapiens Homeo domain factors HOX
MA0873.2 HOXD12 Homo sapiens Homeo domain factors HOX
MA0874.1 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0874.2 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0875.1 BARX1 Homo sapiens Homeo domain factors NK
MA0875.2 BARX1 Homo sapiens Homeo domain factors NK
MA0876.1 BSX Homo sapiens Homeo domain factors NK
MA0876.2 BSX Homo sapiens Homeo domain factors NK
MA0877.1 Barhl1 Mus musculus Homeo domain factors NK
MA0877.2 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.3 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.4 BARHL1 Homo sapiens Homeo domain factors NK
MA0878.1 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.2 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.3 CDX1 Homo sapiens Homeo domain factors HOX
MA0879.1 Dlx1 Mus musculus Homeo domain factors NK
MA0879.2 DLX1 Homo sapiens Homeo domain factors NK
MA0879.3 DLX1 Homo sapiens Homeo domain factors NK
MA0880.1 Dlx3 Mus musculus Homeo domain factors NK
MA0880.2 Dlx3 Mus musculus Homeo domain factors NK
MA0881.1 Dlx4 Mus musculus Homeo domain factors NK
MA0881.2 Dlx4 Mus musculus Homeo domain factors NK
MA0882.1 DLX6 Homo sapiens Homeo domain factors NK
MA0882.2 DLX6 Homo sapiens Homeo domain factors NK
MA0883.1 Dmbx1 Mus musculus Homeo domain factors Paired-related HD factors
Showing 25 profiles of page 70 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.