JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1092.1 WRKY63 Arabidopsis thaliana GCM domain factors WRKY
MA1092.2 WRKY63 Arabidopsis thaliana GCM domain factors WRKY
MA1093.1 WRKY75 Arabidopsis thaliana GCM domain factors WRKY
MA1093.2 WRKY75 Arabidopsis thaliana GCM domain factors WRKY
MA1094.1 WRKY8 Arabidopsis thaliana GCM domain factors WRKY
MA1094.2 WRKY8 Arabidopsis thaliana GCM domain factors WRKY
MA1094.3 WRKY8 Arabidopsis thaliana GCM domain factors WRKY
MA1095.1 ARALYDRAFT_495258 Arabidopsis lyrata subsp. lyrata TCP
MA1096.1 ARALYDRAFT_496250 Arabidopsis lyrata subsp. lyrata TCP
MA1097.1 ARALYDRAFT_493022 Arabidopsis lyrata subsp. lyrata TCP
MA1098.1 ARALYDRAFT_484486 Arabidopsis lyrata subsp. lyrata TCP
MA1099.1 Hes1 Mus musculus Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1099.2 HES1 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1099.3 HES1 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1100.1 ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1100.2 ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1100.3 ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1101.1 BACH2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1101.2 BACH2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1101.3 BACH2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1102.1 CTCFL Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1102.2 CTCFL Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1102.3 CTCFL Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1103.1 FOXK2 Homo sapiens Fork head/winged helix factors FOX
MA1103.2 FOXK2 Homo sapiens Fork head/winged helix factors FOX
Showing 25 profiles of page 86 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.