Detailed information of matrix profile MA0008.2

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Profile summary
Name: HAT5
Matrix ID: MA0008.2
Class: Homeo domain factors
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 8253077
Uniprot ID: Q02283  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 1 0 25 25 0 20 25 0 1 3 10 10 ]
C [ 4 12 0 0 0 0 0 0 0 4 3 3 ]
G [ 8 1 0 0 0 5 0 0 1 13 5 5 ]
T [ 2 3 0 0 25 0 0 25 22 3 4 1 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0008.1 MA0008 1 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.2 MA0008 2 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.3 MA0008 3 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.4 MA0008 4 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: