Detailed information of matrix profile MA0008.3

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Profile summary
Name: HAT5
Matrix ID: MA0008.3
Class: Homeo domain factors
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 8253077
Uniprot ID: Q02283  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 72 80 50 16 190 190 1 134 189 0 6 13 95 75 62 ]
C [ 32 27 31 148 1 0 0 2 0 0 0 5 20 15 24 ]
G [ 29 18 20 1 0 0 0 2 0 0 4 168 30 29 34 ]
T [ 58 66 90 26 0 1 190 53 2 191 181 5 46 72 71 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0008.1 MA0008 1 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.2 MA0008 2 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.3 MA0008 3 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA0008.4 MA0008 4 HAT5 Arabidopsis thaliana
HD-ZIP Homeo domain factors
     

-log(P-value) = 65.4

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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