JASPAR: An open-access database of transcription factor binding profiles

Examples: TEAD1, P42230, ChIP-seq, Vertebrates Advanced Options

Collection:

Taxon:

Species:

Data type:

Class:

Family:

Versions:

	ID	Name	Species	Class	Family	Logo
	MA0116.1	Znf423	Rattus norvegicus	C2H2 zinc finger factors	Factors with multiple dispersed zinc fingers
	MA0116.2	ZNF423	Homo sapiens	C2H2 zinc finger factors	Factors with multiple dispersed zinc fingers

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Input a (FASTA-formatted) sequence to scan with selected matrix models.

Enter FASTA sequence here: (3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.

Column comparison metric

Alignment method

Tree-building method

Multiple alignment method

You can use the Newick tree from results to visualize on PhyloTree

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.

Upload your FASTA file:

No. of background sequences to simulate
Length of background sequences to simulate

Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.

Profile versions