Detailed information of matrix profile MA0148.3

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Profile summary
Name: FOXA1
Matrix ID: MA0148.3
Class: Fork head/winged helix factors
Family: FOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 18798982
Uniprot ID: P55317  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 5183 11242 12493 10160 1452 0 19149 20716 22008 0 21926 6915 5074 5767 8729 ]
C [ 9415 63 1392 0 0 3756 2859 1292 0 16125 12 3641 5314 4731 4124 ]
G [ 2603 1 7296 2655 20556 0 0 0 0 0 0 4317 8558 6851 4827 ]
T [ 4807 10702 827 9193 0 18252 0 0 0 5883 70 7135 3062 4659 4328 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0148.1 MA0148 1 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.2 MA0148 2 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.3 MA0148 3 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.4 MA0148 4 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.5 MA0148 5 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0035.1

ChIP-seq Centrality
-log(P-value): 28445.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0035.1

ChIP-seq Centrality
-log(P-value): 28572.2

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: