Detailed information of matrix profile MA0153.2

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Profile summary
Name: HNF1B
Matrix ID: MA0153.2
Class: Homeo domain factors
Family: POU domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 17916232
Uniprot ID: P35680  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 1528 541 5730 30839 30839 1944 6502 30839 1323 80 30839 30839 1790 ]
C [ 1030 2552 3466 13 1163 809 9236 73 416 665 794 1472 17114 ]
G [ 30839 1434 778 398 140 66 9626 600 1589 1 5271 1980 725 ]
T [ 1628 30839 30839 49 612 30839 5474 1047 30839 30839 3119 406 13724 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0153.1 MA0153 1 HNF1B Homo sapiens
Mus musculus
POU domain factors Homeo domain factors
MA0153.2 MA0153 2 HNF1B Homo sapiens
POU domain factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0178.1

ChIP-seq Centrality
-log(P-value): 2100.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0178.1

ChIP-seq Centrality
-log(P-value): 2126.74

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: