Detailed information of matrix profile MA0442.2

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Profile summary
Name: SOX10
Matrix ID: MA0442.2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 17916232
Uniprot ID: P56693  
Source: 29126285
Comment:

Sequence logo

Frequency matrix

         
A [ 683 723 1118 2023 3 2029 1968 1959 10 666 638 ]
C [ 397 283 372 4 1989 7 28 23 13 552 555 ]
G [ 527 571 317 3 11 7 20 12 2012 619 505 ]
T [ 448 478 248 25 52 12 39 61 20 218 357 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0442.1 MA0442 1 SOX10 Homo sapiens
Mus musculus
Rattus norvegicus
SOX-related factors High-mobility group (HMG) domain factors
MA0442.2 MA0442 2 SOX10 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0442.3 MA0442 3 SOX10 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 375.674

TFFM details

TFFM ID: TFFM0152.1

ChIP-seq Centrality
-log(P-value): 721.63

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0152.1

ChIP-seq Centrality
-log(P-value): 743.859

TFFM detailed summary logos

Description:

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GC Content: