Detailed information of matrix profile MA0461.2

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Profile summary
Name: Atoh1
Matrix ID: MA0461.2
Class: Basic helix-loop-helix factors (bHLH)
Family: Tal-related
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 21300888
Uniprot ID: P48985  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 655 523 42 1027 17 1027 22 2 34 128 ]
C [ 108 334 1027 20 10 74 4 1 234 494 ]
G [ 372 149 8 34 136 0 5 1027 376 126 ]
T [ 59 21 0 0 1027 0 1027 31 384 533 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0461.1 MA0461 1 Atoh1 Mus musculus
Tal-related Basic helix-loop-helix factors (bHLH)
MA0461.2 MA0461 2 Atoh1 Mus musculus
Tal-related Basic helix-loop-helix factors (bHLH)
MA0461.3 MA0461 3 Atoh1 Mus musculus
Tal-related Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0004.1

ChIP-seq Centrality
-log(P-value): 9206.26

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0004.1

ChIP-seq Centrality
-log(P-value): 9339.43

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: