Detailed information of matrix profile MA0508.2

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Profile summary
Name: PRDM1
Matrix ID: MA0508.2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: O75626  
Source: 29126285
Comment:

Sequence logo

Frequency matrix

         
A [ 686 662 3771 3 7 14 23 6 1760 481 ]
C [ 573 2125 2 3776 2 2 5 3777 697 2428 ]
G [ 555 310 11 1 25 6 2 2 172 282 ]
T [ 1971 688 1 5 3751 3763 3755 0 1156 594 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0508.1 MA0508 1 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.2 MA0508 2 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.3 MA0508 3 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0508.4 MA0508 4 PRDM1 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0087.2

ChIP-seq Centrality
-log(P-value): 2588.63

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0087.2

ChIP-seq Centrality
-log(P-value): 2786.5

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: