Detailed information of matrix profile MA0552.1

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Profile summary
Name: PIF1
Matrix ID: MA0552.1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 15448264
Uniprot ID: Q8GZM7  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 37 25 35 53 27 9 38 0 114 0 0 0 0 22 ]
C [ 12 0 28 8 27 17 14 103 0 113 0 2 0 23 ]
G [ 37 53 29 40 32 73 14 11 0 1 114 0 114 51 ]
T [ 28 36 22 13 28 15 48 0 0 0 0 112 0 18 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0552.1 MA0552 1 PIF1 Arabidopsis thaliana
bHLH Basic helix-loop-helix factors (bHLH)
MA0552.2 MA0552 2 PIF1 Arabidopsis thaliana
bHLH Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0555.1

ChIP-seq Centrality
-log(P-value): 1160.52

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0555.1

ChIP-seq Centrality
-log(P-value): 1210.69

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: