Detailed information of matrix profile MA0653.1

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Profile summary
Name: IRF9
Matrix ID: MA0653.1
Class: Tryptophan cluster factors
Family: Interferon-regulatory factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 21731497
Uniprot ID: Q00978  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 3467 2392 49 43 3467 3467 3467 43 16 2 3467 3467 3467 4 99 ]
C [ 52 498 3467 3 5 0 2 3467 3467 0 2 1 0 3467 1129 ]
G [ 43 204 33 3467 1 0 0 197 0 3467 0 0 0 239 7 ]
T [ 110 1076 118 5 0 3 1 9 831 1 0 21 3 2 2338 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0653.1 MA0653 1 IRF9 Homo sapiens
Interferon-regulatory factors Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0757.1

ChIP-seq Centrality
-log(P-value): 6599.47

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0757.1

ChIP-seq Centrality
-log(P-value): 6504.27

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: