Detailed information of matrix profile MA0686.1

  1. Home
  2. Matrix > MA0686.1

Profile summary
Name: SPDEF
Matrix ID: MA0686.1
Class: Tryptophan cluster factors
Family: Ets-related
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 23449978
Uniprot ID: O95238  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 4628 1890 52 237 2 6 4628 532 1566 58 1911 ]
C [ 101 2737 4628 4628 2 0 0 69 601 1345 568 ]
G [ 176 536 92 1 4628 4628 6 11 4628 28 1339 ]
T [ 912 77 0 1 0 8 2 4628 66 4628 810 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0686.1 MA0686 1 SPDEF Homo sapiens
Ets-related Tryptophan cluster factors
MA0686.2 MA0686 2 SPDEF Homo sapiens
Ets-related Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0592.1

ChIP-seq Centrality
-log(P-value): 381.414

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0592.1

ChIP-seq Centrality
-log(P-value): 413.401

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: