Detailed information of matrix profile MA0819.1

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Profile summary
Name: CLOCK
Matrix ID: MA0819.1
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 24591654
Uniprot ID: O15516  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 226 429 11 429 16 40 3 0 1 89 ]
C [ 35 85 429 5 429 0 5 3 152 128 ]
G [ 93 89 2 15 0 429 5 429 110 39 ]
T [ 75 13 2 0 28 0 429 9 429 174 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0819.1 MA0819 1 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
MA0819.2 MA0819 2 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
MA0819.3 MA0819 3 CLOCK Homo sapiens
PAS domain factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0459.1

ChIP-seq Centrality
-log(P-value): 610.927

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0459.1

ChIP-seq Centrality
-log(P-value): 579.789

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: