Detailed information of matrix profile MA0859.2

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Profile summary
Name: Rarg
Matrix ID: MA0859.2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P18911  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 12548 7220 3 0 20 3 8844 9169 8864 9211 1 0 6 0 9147 ]
C [ 1655 147 0 3 35 12653 2 49 13 4 1 2 40 11730 4 ]
G [ 11289 3074 12765 11969 64 38 15 114 618 394 13267 9298 51 67 82 ]
T [ 1309 5 0 1826 10030 79 0 257 353 0 3 2628 9774 105 1 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0859.1 MA0859 1 Rarg Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA0859.2 MA0859 2 Rarg Mus musculus
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: