Detailed information of matrix profile MA0868.1

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Profile summary
Name: SOX8
Matrix ID: MA0868.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 12920151
Uniprot ID: P57073  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 460 460 1 460 460 0 162 1 30 0 460 1 0 0 1 0 ]
C [ 0 0 460 0 1 0 7 0 41 460 0 0 0 0 0 4 ]
G [ 0 0 0 2 1 1 298 0 371 2 0 460 1 460 0 0 ]
T [ 7 0 0 0 1 460 37 460 89 2 0 2 460 0 460 460 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0868.1 MA0868 1 SOX8 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0868.2 MA0868 2 SOX8 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0868.3 MA0868 3 SOX8 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: