JASPAR: An open-access database of transcription factor binding profiles

Examples: TEAD1, P42230, ChIP-seq, Vertebrates Advanced Options

Collection:

Taxon:

Species:

Data type:

Class:

Family:

Versions:

	ID	Name	Species	Class	Family	Logo
	MA0884.1	DUXA	Homo sapiens	Homeo domain factors	Paired-related HD factors
	MA0884.2	DUXA	Homo sapiens	Homeo domain factors	Paired-related HD factors

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Input a (FASTA-formatted) sequence to scan with selected matrix models.

Enter FASTA sequence here: (3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.

Column comparison metric

Alignment method

Tree-building method

Multiple alignment method

You can use the Newick tree from results to visualize on PhyloTree

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.

Upload your FASTA file:

No. of background sequences to simulate
Length of background sequences to simulate

Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.

Profile versions