Detailed information of matrix profile MA1151.1

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Profile summary
Name: RORC
Matrix ID: MA1151.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 25500868
Uniprot ID: P51449  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 306 329 855 527 225 43 623 5 36 59 6 785 ]
C [ 179 114 14 10 249 87 24 2 3 112 822 12 ]
G [ 260 141 11 32 277 116 343 919 952 168 19 161 ]
T [ 255 416 120 431 249 753 11 74 8 661 153 42 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1151.1 MA1151 1 RORC Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1151.2 MA1151 2 RORC Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0578.1

ChIP-seq Centrality
-log(P-value): 2129.68

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0578.1

ChIP-seq Centrality
-log(P-value): 1944.35

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: