Detailed information of matrix profile MA1450.1

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Profile summary
Name: lin-54
Matrix ID: MA1450.1
Class: CRC domain
Family:
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 21589891
Uniprot ID: Q95QD7  
Source: 30413482
Comment: Matches the consensus TTYRAA

Sequence logo

Frequency matrix

         
A [ 445 543 1740 2616 2709 23 14 66 2771 2901 2820 327 814 444 ]
C [ 351 393 174 93 16 27 11 2612 51 14 13 158 159 346 ]
G [ 1823 1744 554 109 98 5 23 19 109 11 17 29 338 697 ]
T [ 328 267 479 129 124 2892 2899 250 16 21 97 2433 1636 1460 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1450.1 MA1450 1 lin-54 Caenorhabditis elegans
CRC domain
MA1450.2 MA1450 2 lin-54 Caenorhabditis elegans
CRC domain
     

-log(P-value) = 697.785

TFFM details

TFFM ID: TFFM0521.1

ChIP-seq Centrality
-log(P-value): 923.883

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0521.1

ChIP-seq Centrality
-log(P-value): 1048.52

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: