Detailed information of matrix profile MA1494.1

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Profile summary
Name: HNF4A
Matrix ID: MA1494.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 25164757
Uniprot ID: P41235  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 212 301 3 2 100 7 651 651 651 0 3 0 2 465 174 ]
C [ 70 7 2 1 651 651 0 1 0 0 0 4 651 5 217 ]
G [ 325 350 651 17 41 4 7 2 5 651 651 24 7 186 101 ]
T [ 43 7 7 651 104 15 0 3 0 1 64 651 35 9 159 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1494.1 MA1494 1 HNF4A Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA1494.2 MA1494 2 HNF4A Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0860.1

ChIP-seq Centrality
-log(P-value): 28484.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0860.1

ChIP-seq Centrality
-log(P-value): 27383.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: