Detailed information of matrix profile UN0404.1

  1. Home
  2. Matrix > UN0404.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: KHZ1
Matrix ID: UN0404.1
Class: CH3
Family:
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9C7C3  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 480 420 372 168 717 762 1000 1000 985 0 98 273 585 477 ]
C [ 127 173 137 362 98 22 0 0 0 0 130 105 15 173 ]
G [ 222 187 230 307 118 0 0 0 15 1000 347 172 298 148 ]
T [ 172 220 262 163 67 217 0 0 0 0 425 450 102 202 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0404.1 UN0404 1 KHZ1 Arabidopsis thaliana
CH3
UN0404.2 UN0404 2 KHZ1 Arabidopsis thaliana
CH3
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: