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33 profile(s) found

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ID Name Species Class Family Logo
MA0456.1 opa Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0646.1 GCM1 Homo sapiens
 GCM domain factors GCM
MA0646.2 GCM1 Homo sapiens
 GCM domain factors GCM
MA0675.1 NKX6-2 Homo sapiens
 Homeo domain factors NK
MA0675.2 NKX6-2 Homo sapiens
 Homeo domain factors NK
MA0734.1 GLI2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0734.2 GLI2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0734.3 Gli2 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0734.4 Gli2 Mus musculus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0735.1 GLIS1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.