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48 profile(s) found

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ID Name Species Class Family Logo
MA0038.1 Gfi1 Rattus norvegicus
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.2 GFI1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.3 GFI1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0138.1 REST Homo sapiens
 C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0138.2 REST Homo sapiens
 C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0138.3 REST Homo sapiens
 C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0162.1 Egr1 Mus musculus
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.2 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.3 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.4 EGR1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.