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ID Name Species Class Family Logo
MA1153.2 Smad4 Mus musculus
 SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1156.1 JKD Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1156.2 JKD Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1157.1 NUC Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1157.2 NUC Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1158.1 MGP Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1158.2 MGP Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1159.1 SGR5 Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1159.2 SGR5 Arabidopsis thaliana
 C2H2 zinc finger factors IDD
MA1160.1 IDD6 Arabidopsis thaliana
 C2H2 zinc finger factors IDD
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.