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138 profile(s) found

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ID Name Species Class Family Logo
MA1639.2 MEIS1 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA1640.1 MEIS2 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA1640.2 MEIS2 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA1671.1 ERF118 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1671.2 ERF118 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1748.1 DREB1F Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1748.2 DREB1F Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1752.1 ERF025 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1752.2 ERF025 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1753.1 ERF057 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.