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183 profile(s) found

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ID Name Species Class Family Logo
MA1382.2 FAR1 Arabidopsis thaliana
 GCM domain factors FRS/FRF
MA1443.1 unc-30 Caenorhabditis briggsae
 Homeo domain factors Paired-related HD factors
MA1443.2 unc-30 Caenorhabditis briggsae
 Homeo domain factors Paired-related HD factors
MA1461.1 sv Drosophila melanogaster
 Paired box factors Paired domain only
MA1461.2 sv Drosophila melanogaster
 Paired box factors Paired domain only
MA1463.1 ARGFX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1463.2 ARGFX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1480.1 DPRX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1480.2 DPRX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1481.1 DRGX Homo sapiens
 Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.