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ID Name Species Class Family Logo
MA1325.2 GATA14 Arabidopsis thaliana
 Other C4 zinc finger-type factors C4-GATA-related
MA1326.1 ZHD5 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1326.2 ZHD5 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1327.1 ATHB-23 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA1327.2 ATHB-23 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA1327.3 ATHB-23 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA1328.1 ZHD9 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1329.1 ZHD1 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1329.2 ZHD1 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1329.3 ZHD1 Arabidopsis thaliana
 Homeo domain factors PLINC
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.