Search profile(s)

  1. Home
  2. Search

183 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA1889.2 Isx Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1907.1 Otp Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1907.2 Otp Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1908.1 Otx Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1908.2 Otx Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1909.1 Prop Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1909.2 Prop Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1910.1 Rax Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1910.2 Rax Ciona intestinalis
 Homeo domain factors Paired-related HD factors
MA1925.1 Uncx-b Ciona intestinalis
 Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 16 from 19 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.