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183 profile(s) found

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ID Name Species Class Family Logo
MA2115.1 Pax6 Ciona intestinalis
 Paired box factors Paired plus homeo domain
MA2131.1 egl-38 Caenorhabditis elegans
 Paired box factors Paired domain only
MA2147.1 nsy-7 Caenorhabditis elegans
 Homeo domain factors Paired-related HD factors
MA2151.1 pax-2 Caenorhabditis elegans
 Paired box factors Paired domain only
MA2159.1 ceh-36 Caenorhabditis elegans
 Homeo domain factors Paired-related HD factors
MA2179.1 ceh-10 Caenorhabditis elegans
 Homeo domain factors Paired-related HD factors
MA2239.1 gsb Drosophila melanogaster
 Paired box factors Paired plus homeo domain
MA2263.1 Poxm Drosophila melanogaster
 Paired box factors Paired domain only
MA2272.1 slp2 Drosophila melanogaster
 Fork head/winged helix factors FOX
MA2289.1 toy Drosophila melanogaster
 Paired box factors Paired plus homeo domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.