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183 profile(s) found

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ID Name Species Class Family Logo
MA0075.1 Prrx2 Mus musculus
 Homeo domain factors Paired-related HD factors
MA0075.2 Prrx2 Mus musculus
 Homeo domain factors Paired-related HD factors
MA0075.3 PRRX2 Homo sapiens
 Homeo domain factors Paired-related HD factors
MA0075.4 PRRX2 Homo sapiens
 Homeo domain factors Paired-related HD factors
MA0125.1 Nobox Mus musculus
 Homeo domain factors Paired-related HD factors
MA0125.2 Nobox Mus musculus
 Homeo domain factors Paired-related HD factors
MA0172.1 CG11294 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0179.1 CG32532 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0180.1 Vsx2 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0181.1 Vsx1 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.