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93 profile(s) found

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ID Name Species Class Family Logo
MA0037.2 GATA3 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0037.3 GATA3 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0037.4 Gata3 Mus musculus
 Other C4 zinc finger-type factors C4-GATA-related
MA0037.5 Gata3 Mus musculus
 Other C4 zinc finger-type factors C4-GATA-related
MA0100.3 MYB Homo sapiens
 Tryptophan cluster factors Myb/SANT domain factors
MA0100.4 MYB Homo sapiens
 Tryptophan cluster factors Myb/SANT domain factors
MA0140.1 Gata1::Tal1 Mus musculus
 Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH) C4-GATA-related::Tal-related
MA0140.2 GATA1::TAL1 Homo sapiens
 Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH) C4-GATA-related::Tal-related
MA0140.3 GATA1::TAL1 Homo sapiens
 Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH) C4-GATA-related::Tal-related
MA0276.1 ASH1 Saccharomyces cerevisiae
 Other C4 zinc finger-type factors C4-GATA-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.