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33 profile(s) found

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ID Name Species Class Family Logo
MA0735.2 GLIS1 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0736.1 GLIS2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0737.1 GLIS3 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0767.1 GCM2 Homo sapiens
 GCM domain factors GCM
MA0767.2 GCM2 Homo sapiens
 GCM domain factors GCM
MA0917.1 gcm2 Drosophila melanogaster
 GCM domain factors GCM
MA1481.1 DRGX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1481.2 DRGX Homo sapiens
 Homeo domain factors Paired-related HD factors
MA1491.1 GLI3 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1491.2 GLI3 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.