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50 profile(s) found

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ID Name Species Class Family Logo
MA0770.1 HSF2 Homo sapiens
 Heat shock factors HSF factors
MA0771.1 HSF4 Homo sapiens
 Heat shock factors HSF factors
MA1458.1 Hsf Drosophila melanogaster
 Heat shock factors HSF factors
MA1458.2 Hsf Drosophila melanogaster
 Heat shock factors HSF factors
MA1540.1 NR5A1 Homo sapiens
 Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA1664.1 HSFA6B Arabidopsis thaliana
 Heat shock factors HSF
MA1664.2 HSFA6B Arabidopsis thaliana
 Heat shock factors HSF
MA1664.3 HSFA6B Arabidopsis thaliana
 Heat shock factors HSF
MA1665.1 HSFB2A Arabidopsis thaliana
 Heat shock factors HSF
MA1665.2 HSFB2A Arabidopsis thaliana
 Heat shock factors HSF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.