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24 profile(s) found

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ID Name Species Class Family Logo
MA0640.1 ELF3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0640.2 ELF3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0640.3 ELF3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0745.1 SNAI2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0745.2 SNAI2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0745.3 SNAI2 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1035.1 TCP4 Arabidopsis thaliana
 TCP
MA1329.2 ZHD1 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1329.3 ZHD1 Arabidopsis thaliana
 Homeo domain factors PLINC
MA1577.1 TLX2 Homo sapiens
 Homeo domain factors NK
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.