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19 profile(s) found

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ID Name Species Class Family Logo
MA0083.3 SRF Homo sapiens
 MADS box factors Responders to external signals (SRF/RLM1)
MA0660.1 MEF2B Homo sapiens
 MADS box factors Regulators of differentiation
MA0759.1 ELK3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0759.2 ELK3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0759.3 ELK3 Homo sapiens
 Tryptophan cluster factors Ets-related
MA1955.1 FOXO1::ELK3 Homo sapiens
 Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1955.2 FOXO1::ELK3 Homo sapiens
 Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA2200.1 bs Drosophila melanogaster
 MADS box factors Responders to external signals (SRF/RLM1)
MA2706.1 SMP1 Saccharomyces cerevisiae
 MADS box factors Responders to external signals (SRF/RLM1)
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.