Search profile(s)

  1. Home
  2. Search

2470 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA1800.1 TEM1 Arabidopsis thaliana
 B3 RAV
MA1801.1 TREE1 Arabidopsis thaliana
 C2H2 zinc finger factors C2H2
MA1801.2 TREE1 Arabidopsis thaliana
 C2H2 zinc finger factors C2H2
MA1802.1 TRP5 Arabidopsis thaliana
 Tryptophan cluster factors MYB-related
MA1802.2 TRP5 Arabidopsis thaliana
 Tryptophan cluster factors MYB-related
MA1803.1 VIP1 Arabidopsis thaliana
 Basic leucine zipper factors (bZIP) Group I
MA1803.2 VIP1 Arabidopsis thaliana
 Basic leucine zipper factors (bZIP) Group I
MA1804.1 WIN1 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1804.2 WIN1 Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA1805.1 WRKY53 Arabidopsis thaliana
 GCM domain factors WRKY
Showing 10 profiles of page 200 from 247 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.