Search profile(s)

  1. Home
  2. Search

2470 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA2114.1 Pax3-7-like Ciona intestinalis
 Paired box factors Paired plus homeo domain
MA2115.1 Pax6 Ciona intestinalis
 Paired box factors Paired plus homeo domain
MA2116.1 Pou4 Ciona intestinalis
 Homeo domain factors POU domain factors
MA2117.1 FOXP4 Homo sapiens
 Fork head/winged helix factors FOX
MA2118.1 FOXS1 Homo sapiens
 Fork head/winged helix factors FOX
MA2122.1 Ebf4 Mus musculus
 Rel homology region (RHR) factors EBF-related
MA2123.1 Hand1 Mus musculus
 Basic helix-loop-helix factors (bHLH) Tal-related
MA2128.1 ceh-18 Caenorhabditis elegans
 Homeo domain factors POU domain factors
MA2131.1 egl-38 Caenorhabditis elegans
 Paired box factors Paired domain only
MA2132.1 egrh-1 Caenorhabditis elegans
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 219 from 247 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.