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236 profile(s) found

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ID Name Species Class Family Logo
MA2368.1 WRKY51 Arabidopsis thaliana
 GCM domain factors WRKY
MA2376.1 CAMTA5 Arabidopsis thaliana
 GCM domain factors CAMTA
MA2387.1 NAC094 Arabidopsis thaliana
 GCM domain factors NAC
MA2460.1 MGH6.1 Arabidopsis thaliana
 GCM domain factors NAC
MA2472.1 AT3G12910 Arabidopsis thaliana
 GCM domain factors NAC
MA2643.1 SNAC23 Glycine max
 GCM domain factors NAC
MA2644.1 GLYMA-14G030700 Glycine max
 GCM domain factors NAC
MA2645.1 GLYMA-16G042900 Glycine max
 GCM domain factors NAC
MA2652.1 GLYMA-01G053800 Glycine max
 GCM domain factors WRKY
MA2653.1 GLYMA-03G042700 Glycine max
 GCM domain factors WRKY
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.