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ID Name Species Class Family Logo
MA2624.1 myb37 Zea mays
 Tryptophan cluster factors MYB
MA2625.1 mybr17 Zea mays
 Tryptophan cluster factors MYB-related
MA2626.1 bzip40 Zea mays
 Basic leucine zipper factors (bZIP) Group S
MA2627.1 bzip9 Zea mays
 Basic leucine zipper factors (bZIP) Group S
MA2631.1 bab1 Drosophila melanogaster
 C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2634.1 EIN3 Arabidopsis thaliana
 EIL EIL
MA2635.1 FUL Arabidopsis thaliana
 MADS box factors Type II
MA2636.1 FUL::AG Arabidopsis thaliana
 MADS box factors Type II
MA2637.1 FUL::AG::SEP3 Arabidopsis thaliana
 MADS box factors Type II
MA2638.1 FUL::SEP3 Arabidopsis thaliana
 MADS box factors Type II
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.