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2470 profile(s) found

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ID Name Species Class Family Logo
MA2669.1 GLYMA-04G231400 Glycine max
 Homeo domain factors HD-ZIP
MA2670.1 GLYMA-15G168800 Glycine max
 Homeo domain factors HD-ZIP
MA2671.1 GLYMA-19G100900 Glycine max
 B3 LAV
MA2672.1 GLYMA-01G233000 Glycine max
 Heat shock factors HSF
MA2673.1 GLYMA-15G086400 Glycine max
 Heat shock factors HSF
MA2677.1 HOXD1 Homo sapiens
 Homeo domain factors HOX
MA2678.1 IRX1 Homo sapiens
 Homeo domain factors TALE-type HD
MA2679.1 IRX2 Homo sapiens
 Homeo domain factors TALE-type HD
MA2680.1 IRX5 Homo sapiens
 Homeo domain factors TALE-type HD
MA2692.1 ZNF43 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.