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183 profile(s) found

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ID Name Species Class Family Logo
MA0184.1 CG9876 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0184.2 CG9876 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0190.1 Gsc Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0198.1 OdsH Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0200.1 Pph13 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0200.2 Pph13 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0201.1 Ptx1 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0202.1 Rx Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0208.1 al Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0212.1 bcd Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.