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24 profile(s) found

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ID Name Species Class Family Logo
MA1451.1 nhr-6 Caenorhabditis elegans
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA2150.1 pag-3 Caenorhabditis elegans
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2243.1 Hr38 Drosophila melanogaster
 Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA2271.1 sens Drosophila melanogaster
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.