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2470 profile(s) found

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ID Name Species Class Family Logo
MA0313.1 HAP2 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0314.1 HAP3 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0314.2 HAP3 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0314.3 HAP3 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0316.1 HAP5 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0316.2 HAP5 Saccharomyces cerevisiae
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0317.1 HCM1 Saccharomyces cerevisiae
 Fork head/winged helix factors FOX
MA0317.2 HCM1 Saccharomyces cerevisiae
 Fork head/winged helix factors FOX
MA0318.1 HMRA2 Saccharomyces cerevisiae
 Homeo domain factors TALE-type homeo domain factors
MA0319.1 HSF1 Saccharomyces cerevisiae
 Heat shock factors HSF factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.