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183 profile(s) found

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ID Name Species Class Family Logo
MA0226.1 hbn Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0234.1 oc Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0236.1 otp Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0239.1 prd Drosophila melanogaster
 Paired box factors
MA0239.2 prd Drosophila melanogaster
 Paired box factors
MA0240.1 repo Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0245.1 slou Drosophila melanogaster
 Homeo domain factors NK
MA0250.1 unc-4 Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0254.1 vvl Drosophila melanogaster
 Homeo domain factors POU domain factors
MA0263.1 ceh-10::ttx-3 Caenorhabditis elegans
 Homeo domain factors Paired-related HD factors::HD-LIM factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.