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138 profile(s) found

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ID Name Species Class Family Logo
MA0754.2 CUX1 Homo sapiens
 Homeo domain factors HD-CUT
MA0754.3 CUX1 Homo sapiens
 Homeo domain factors HD-CUT
MA0774.1 MEIS2 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA0775.1 MEIS3 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA0775.2 MEIS3 Homo sapiens
 Homeo domain factors TALE-type homeo domain factors
MA0867.1 SOX4 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA0867.2 SOX4 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA0867.3 SOX4 Homo sapiens
 High-mobility group (HMG) domain factors SOX-related factors
MA0978.1 DREB1E Arabidopsis thaliana
 AP2/EREBP ERF/DREB
MA0986.1 DREB2C Arabidopsis thaliana
 AP2/EREBP ERF/DREB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.