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50 profile(s) found

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ID Name Species Class Family Logo
MA1759.2 HSFA4A Arabidopsis thaliana
 Heat shock factors HSF
MA1760.1 HSFA6A Arabidopsis thaliana
 Heat shock factors HSF
MA1761.1 HSFB3 Arabidopsis thaliana
 Heat shock factors HSF
MA1761.2 HSFB3 Arabidopsis thaliana
 Heat shock factors HSF
MA1887.1 Hsf1-2-4 Ciona intestinalis
 Heat shock factors HSF factors
MA1887.2 Hsf1-2-4 Ciona intestinalis
 Heat shock factors HSF factors
MA2019.1 HSFA1B Arabidopsis thaliana
 Heat shock factors HSF
MA2019.2 HSFA1B Arabidopsis thaliana
 Heat shock factors HSF
MA2020.1 HSFB4 Arabidopsis thaliana
 Heat shock factors HSF
MA2020.2 HSFB4 Arabidopsis thaliana
 Heat shock factors HSF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.